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Test Code LQTSG Long QT Syndrome Gene Panel, Varies


Ordering Guidance


This test is intended for genetic screening for and diagnosis of long QT syndrome.

 

For Brugada syndrome genetic testing, order SCN5A / Brugada Syndrome Multi-Gene Panel, Blood.

 

For comprehensive inherited cardiac arrhythmia genetic testing, order CARGG / Comprehensive Arrhythmia Gene Panel, Varies.

 

Customization of this panel and single gene analysis for any gene present on this panel are available. For more information see CGPH / Custom Gene Panel, Hereditary, Next-Generation Sequencing, Varies.

 

Targeted testing for familial variants (also called site-specific or known mutations testing) is available for the genes on this panel. See FMTT / Familial Variant, Targeted Testing, Varies. To obtain more information about this testing option, call 800-533-1710.



Shipping Instructions


Specimen preferred to arrive within 96 hours of collection.



Necessary Information


Prior Authorization is available, but not required, for this test. If proceeding with the prior authorization process, submit the required form with the specimen.



Specimen Required


Patient Preparation: A previous bone marrow transplant from an allogenic donor will interfere with testing. Call 800-533-1710 for instructions for testing patients who have received a bone marrow transplant.

  

Specimen Type: Whole blood

Container/Tube:

Preferred: Lavender top (EDTA) or yellow top (ACD)

Acceptable: Any anticoagulant

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix blood

2. Send whole blood specimen in original tube. Do not aliquot.

Specimen Stability Information: Ambient (preferred)/Refrigerated


Forms

. New York Clients-Informed consent is required. Document on the request form or electronic order that a copy is on file. The following documents are available:

-Informed Consent for Genetic Testing (T576)

-Informed Consent for Genetic Testing (Spanish) (T826)

2. Hereditary Cardiomyopathies and Arrhythmias Patient Information

3. Long QT Syndrome Gene Panel (LQTSG) Prior Authorization Ordering Instructions

4. If not ordering electronically, complete, print, and send a Cardiovascular Test Request Form (T724) with the specimen.

Secondary ID

617351

Useful For

Providing a genetic evaluation for patients with a personal or family history suggestive of long QT syndrome (LQTS)

 

Establishing a diagnosis of LQTS

Method Name

Sequence Capture and Targeted Next-Generation Sequencing followed by Polymerase Chain Reaction (PCR) and Sanger Sequencing.

Reporting Name

Long QT Syndrome Gene Panel

Specimen Type

Varies

Specimen Minimum Volume

1 mL

Specimen Stability Information

Specimen Type Temperature Time Special Container
Varies Varies

Reject Due To

All specimens will be evaluated at Mayo Clinic Laboratories for test suitability.

Clinical Information

Long QT syndrome (LQTS) is a genetic cardiac arrhythmia condition characterized by QT prolongation and T-wave abnormalities on an electrocardiogram (ECG). LQTS may result in or present with recurrent syncope, ventricular arrhythmia (commonly torsade de pointes), sudden cardiac arrest, and sudden cardiac death. Some subtypes of LQTS are also referred to as Romano-Ward syndrome (RWS).(1)

 

LQTS has a prevalence of approximately 1:2000 and is caused by loss-of-function, disease-causing variants in genes that encode cardiac ion channels or associated proteins. It is estimated that up to 75% of individuals meeting clinical diagnostic criteria for LQTS are found to harbor a disease-causing variant in one of three genes: KCNQ1, KCNH2, and SCN5A.(2) Disease-causing variants in additional genes contribute to a minority of LQTS cases.(2) In most cases, LQTS follows an autosomal dominant pattern of inheritance.

 

Jervell and Lange-Nielsen syndrome (JLNS) is a rare condition characterized by prolonged QT interval and congenital profound bilateral sensorineural hearing loss. JLNS follows an autosomal recessive inheritance pattern and is caused by homozygous or compound heterozygous disease-causing variants in either KCNQ1 or KCNE1.(1)

 

Andersen-Tawil syndrome is a rare condition characterized by prolonged QT interval, ventricular arrhythmias, episodic muscle weakness, and congenital anomalies that may include facial dysmorphology, clinodactyly, hand/foot syndactyly, short stature, and scoliosis. Andersen-Tawil syndrome follows an autosomal dominant inheritance pattern and is caused by disease-causing variants in the KCNJ2 gene.(3)

 

Timothy syndrome is a rare, systemic condition involving prolonged QT interval in association with seizures, neurodevelopmental delays, recurrent infections, and congenital anomalies that may include hand/foot syndactyly, structural heart defects, and facial dysmorphology. Timothy syndrome follows an autosomal dominant patten of inheritance and is caused by disease-causing variants in the CACNA1C gene.(4)

 

Genetic testing in LQTS is recommended and supported by multiple consensus statements to confirm the clinical diagnosis, assist with risk stratification, guide management, and identify at-risk family members. Even individuals with a normal QT interval may still be at risk for a cardiac event and sudden cardiac death and, thus, ECG analysis alone is insufficient to rule out the diagnosis and genetic testing is necessary to confirm the presence or absence of disease in at-risk family members.(1-4)

Reference Values

An interpretive report will be provided.

Interpretation

All detected variants are evaluated according to American College of Medical Genetics and Genomics recommendations.(5) Variants are classified based on known, predicted, or possible pathogenicity and reported with interpretive comments detailing their potential or known significance.

Method Description

Next-generation sequencing (NGS) and/or Sanger sequencing is performed to test for the presence of variants in coding regions and intron/exon boundaries of the genes analyzed, as well as some other regions that have known disease-causing variants. The human genome reference GRCh37/hg19 build was used for sequence read alignment. At least 99% of the bases are covered at a read depth over 30X. Sensitivity is estimated at above 99% for single nucleotide variants, above 94% for deletion-insertions (delins) less than 40 base pairs (bp), above 95% for deletions up to 75 bp and insertions up to 47 bp. NGS and/or a polymerase chain reaction-based quantitative method is performed to test for the presence of deletions and duplications in the genes analyzed.

 

There may be regions of genes that cannot be effectively evaluated by sequencing or deletion and duplication analysis as a result of technical limitations of the assay, including regions of homology, high guanine-cytosine content, and repetitive sequences. See Targeted Genes and Methodology Details for Long QT Syndrome Gene Panel for details regarding the targeted genes analyzed for each test and specific gene regions not routinely covered.(Unpublished Mayo method)

 

Confirmation of select reportable variants may be performed by alternate methodologies based on internal laboratory criteria.

 

Genes analyzed: CACNA1C, CALM1, CALM2, CALM3, KCNE1, KCNH2, KCNJ2, KCNQ1, SCN5A, and TRDN

Day(s) Performed

Varies

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

81403

81406 x2

81407

81479

81479 (if appropriate for government payers)

LOINC Code Information

Test ID Test Order Name Order LOINC Value
LQTSG Long QT Syndrome Gene Panel 55146-5

 

Result ID Test Result Name Result LOINC Value
617352 Test Description 62364-5
617353 Specimen 31208-2
617354 Source 31208-2
617355 Result Summary 50397-9
617356 Result 82939-0
617357 Interpretation 69047-9
617358 Additional Results 82939-0
617359 Resources 99622-3
617360 Additional Information 48767-8
617361 Method 85069-3
617362 Genes Analyzed 48018-6
617363 Disclaimer 62364-5
617364 Released By 18771-6

Prior Authorization

Insurance preauthorization is available for this testing; forms are available.

 

Patient financial assistance may be available to those who qualify. Patients who receive a bill from Mayo Clinic Laboratories will receive information on eligibility and how to apply.