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Test Code TELDP Telomere Biology Disorders Gene Panel, Varies


Ordering Guidance


Targeted testing for familial variants (also called site-specific or known variants testing) is available for the genes on this panel. See FMTT / Familial Variant, Targeted Testing, Varies. To obtain more information about testing option, call 800-533-1710.



Shipping Instructions


Specimen preferred to arrive within 96 hours of collection.



Specimen Required


Patient Preparation: A previous bone marrow transplant from an allogenic donor will interfere with testing. Call 800-533-1710 for instructions for testing patients who have received a bone marrow transplant.

 

Submit only 1 of the following specimens:

 

Specimen Type: Whole blood

Container/Tube:

Preferred: Lavender top (EDTA) or yellow top (ACD)

Acceptable: Any anticoagulant

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix blood.

2. Send whole blood specimen in original tube. Do not aliquot.

Specimen Stability Information: Ambient (preferred) 4 days/Refrigerated

 

Specimen Type: Skin biopsy

Supplies: Fibroblast Biopsy Transport Media (T115)

Container/Tube: Sterile container with any standard cell culture media (eg, minimal essential media, RPMI 1640). The solution should be supplemented with 1% penicillin and streptomycin.

Specimen Volume: 4-mm punch

Specimen Stability Information: Refrigerated (preferred)/Ambient

Additional Information: A separate culture charge will be assessed under CULFB / Fibroblast Culture for Biochemical or Molecular Testing, Chorionic Villi/Products of Conception/Tissue. An additional 3 to 4 weeks is required to culture fibroblasts before genetic testing can occur.

 

Specimen Type: Cultured fibroblasts

Container/Tube: T-25 flask

Specimen Volume: 2 Flasks

Collection Instructions: Submit confluent cultured fibroblast cells from a skin biopsy from another laboratory. Cultured cells from a prenatal specimen will not be accepted.

Specimen Stability Information: Ambient (preferred)/Refrigerated (<24 hours)

Additional Information: A separate culture charge will be assessed under CULFB / Fibroblast Culture for Biochemical or Molecular Testing, Chorionic Villi/Products of Conception/Tissue. An additional 3 to 4 weeks is required to culture fibroblasts before genetic testing can occur.


Forms

1. New York Clients-Informed consent is required. Document on the request form or electronic order that a copy is on file. The following documents are available:

-Informed Consent for Genetic Testing (T576)

-Informed Consent for Genetic Testing (Spanish) (T826)

2. Molecular Genetics: Congenital Inherited Diseases Patient Information (T521)

3. Congenital Neutropenia, Bone Marrow Failure, Telomere Defects, and Pulmonary Fibrosis (IPF) Patient Information

Secondary ID

619886

Useful For

Providing a comprehensive genetic evaluation for patients with a personal or family history suggestive of a telomere biology disorder

 

Establishing a diagnosis of a telomere biology disorder, allowing for appropriate management and surveillance for disease features based on the gene and/or variant involved

 

Identifying disease-causing variants within genes known to be associated with increased risk for telomere defects, allowing for predictive testing of at-risk family members

Reflex Tests

Test ID Reporting Name Available Separately Always Performed
CULFB Fibroblast Culture for Genetic Test Yes No

Testing Algorithm

For skin biopsy or cultured fibroblast specimens, fibroblast culture will be performed at an additional charge. If viable cells are not obtained, the client will be notified.

Method Name

Sequence Capture and Targeted Next-Generation Sequencing (NGS) followed by Polymerase Chain Reaction (PCR) and Sanger Sequencing

Reporting Name

Telomere Disorders Gene Panel

Specimen Type

Varies

Specimen Minimum Volume

Whole blood: 1 mL; Skin biopsy or cultured fibroblasts: See Specimen Required

Specimen Stability Information

Specimen Type Temperature Time Special Container
Varies Varies

Reject Due To

All specimens will be evaluated at Mayo Clinic Laboratories for test suitability.

Clinical Information

Telomeres are highly specialized structures composed of TTAGGG nucleotide repeats and proteins that protect chromosome ends. Under normal circumstances, telomeres shorten with every cycle of DNA replication. Telomerase is an enzyme complex that can extend the length of the telomere, thus helping to slow the shortening process. Telomerase is most active in highly proliferative tissues, such as lymphocytes, skin, intestine, and bone marrow.

 

Telomere biology disorders (TBD) include a complex group of syndromes characterized by abnormally short telomeres. Telomere length analysis in leukocyte subsets is usually performed by flow fluorescent in situ hybridization. The severity of TBD syndromes is variable, and they may present in children or adults. Symptoms of TBD include bone marrow failure, pulmonary fibrosis, liver disease, gastrointestinal disease, and mucocutaneous abnormalities. The prevalence of cancer in the short telomere syndromes is increased. These cancers are mainly hematological malignancies, such as myelodysplastic syndrome and acute myelogenous leukemia, although some solid tumor prevalence is also increased (eg, oral squamous cell carcinoma). Recognition and diagnosis of underlying TBD is important, as it can help guide treatment decisions.

 

Dyskeratosis congenita (DC) was the first TBD to be described. The subsets of DC include classic DC, Hoyeraal Hreidarsson syndrome (HHS), Revesz syndrome, DC-like conditions, Coats plus syndrome, and isolated subtypes.

 

Patients with the classic forms of DC are usually diagnosed in childhood with a triad of mucocutaneous features, including dysplastic nails, anomalies of skin pigmentation, and oral leukoplakia. Other features may include bone marrow failure, gastrointestinal disease, liver disease, pulmonary fibrosis, a predisposition to certain cancers, and other medical problems. Alternatively, some patients may have one of the 3 classic features of classic DC along with a hypocellular bone marrow. These patients all have very short telomeres (<1% percentile of age) in leukocytes.

 

Patients with HHS have the features of classic DC but additionally have cerebellar hypoplasia, neurological conditions, and severe immunodeficiency. They can also have low T-cell numbers with severe B and natural killer (NK) cell lymphopenia (T±B- NK-) reminiscent of severe combined immunodeficiency.

 

In Revesz syndrome, patients have bilateral exudative retinopathy along with other features of DC. Coats plus syndrome is also characterized by bilateral exudative retinopathy in addition to gastrointestinal problems and other symptoms.

 

When a TBD manifests in adulthood, the presentation can be variable according to the severity of the telomere length defect relative to age. A broad umbrella of clinical features could include bone marrow failure, pulmonary fibrosis, liver disease not otherwise classified, myelodysplastic syndrome, acute myeloid leukemia, or early onset of malignancies within the DC grouping.

 

A classification of DC-like may be applied for patients who do not meet the diagnostic criteria of DC but have several features reminiscent of the disease. This could include presence of bone marrow failure, developmental delay, familial history of pulmonary fibrosis, and no other clear diagnosis.

 

The TBD can be inherited in a variety of patterns, including X-linked recessive, autosomal dominant, and autosomal recessive. Approximately 60% to 80% of patients with TBD have variants in the genes evaluated by this panel. In autosomal dominant DC, phenotypes may present at a younger age and more severely in successive generations (genetic anticipation). The genetic anticipation is mediated by the shortened telomeres that are inherited together with the disease-causing variant.

 

It is increasingly recognized that TBD also include syndromes characterized by abnormally long telomeres. Telomere length is controlled, and like short telomeres, long telomeres also have consequences, mainly increased risk of cancers. The genetic basis of these short and long telomere syndromes may be linked to different disease-causing variants in the same genes. Loss-of-function variants in TERT lead to short telomere syndromes as described earlier, whereas gain-of-function variants lead to increased telomere length and autosomal dominant familial melanoma. Similarly, disease-causing variants in ACD and TINF2 have been described to cause both long and short telomers. Long telomeres caused by these variants lead to increased cancer risk (familial melanoma and thyroid cancer).

Reference Values

An interpretive report will be provided

Interpretation

All detected variants are evaluated according to American College of Medical Genetics and Genomics recommendations.(1) Variants are classified based on known, predicted, or possible pathogenicity and reported with interpretive comments detailing their potential or known significance.

Method Description

Next-generation sequencing (NGS) and/or Sanger sequencing are performed to test for the presence of variants in coding regions and intron/exon boundaries of the genes analyzed, as well as some other regions that have known disease-causing variants. The human genome reference GRCh37/hg19 build was used for sequence read alignment. At least 99% of the bases are covered at a read depth over 30X. Sensitivity is estimated at above 99% for single nucleotide variants, above 94% for deletions/insertions (delins) less than 40 base pairs (bp), and above 95% for deletions up to 75 bp and insertions up to 47 bp. NGS and/or a polymerase chain reaction-based quantitative method is performed to test for the presence of deletions and duplications in the genes analyzed.

 

There may be regions of genes that cannot be effectively evaluated by sequencing or deletion and duplication analysis as a result of technical limitations of the assay, including regions of homology, high guanine-cytosine (GC) content, and repetitive sequences. See Targeted Genes and Methodology Details for Telomere Biology Disorders Gene Panel for details regarding the targeted genes analyzed for each test and specific gene regions not routinely covered.(Unpublished Mayo method)

 

Confirmation of select reportable variants may be performed by alternate methodologies based on internal laboratory criteria.

 

Genes analyzed: ACD, CTC1, DKC1, LIG4, NAF1, NHP2, NOP10, PARN, POT1, RPA1, RTEL1, STN1, TERC, TERT, TINF2, USB1, WRAP53, ZCCHC8

Day(s) Performed

Varies

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

81443

88233- Tissue culture, skin, solid tissue biopsy (if appropriate)

88240- Cryopreservation (if appropriate)

LOINC Code Information

Test ID Test Order Name Order LOINC Value
TELDP Telomere Disorders Gene Panel 35463-9

 

Result ID Test Result Name Result LOINC Value
619887 Test Description 62364-5
619888 Specimen 31208-2
619889 Source 31208-2
619890 Result Summary 50397-9
619891 Result 82939-0
619892 Interpretation 69047-9
619893 Additional Results 82939-0
619894 Resources 99622-3
619895 Additional Information 48767-8
619896 Method 85069-3
619897 Genes Analyzed 82939-0
619898 Disclaimer 62364-5
619899 Released By 18771-6